PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.058710.1
Common NameCsa_4G615240, LOC101205993
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 551aa    MW: 60342.6 Da    PI: 6.6727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.058710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-16355401455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRR+riN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Cucsa.058710.1 355 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-21348415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.59351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-14355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-20355409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-9365405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MNYCFPDWNF EGDIPPAKKS MGPEHDDLVE LLWRNGQVVL QSQKARKSSL IANEVRQFQK  60
QNQPLYRSNV SCGNSSNLIQ DDETVSWIQD PLDDSFEKEF CSNFFSELPP ADPIEIVKQP  120
IKHFQDDKQT RFGAFDTATH VTFGNFVKKN SKPPASLAEF PMNTMPPPRF QFQDSSRQNK  180
DLGDLGKLVN FSQVPVPPLK GDLGSSNGGR ESGNLIQGEG RDCSGMTVGS SHCGSNQVPN  240
PNDLDLSRVS TSGFGNAGLS AGFSKEDNRK MVAQGERDKT ETMDPTATSS SGGSGSSMDR  300
SRTIGQSTGG NGNKRKGRDG EESECQSETA ELESAEGNKT APRSGSSRRT RAAEVHNLSE  360
RRRRERINEK MKALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPMMFPG  420
VQHYMSRVAM GMGMAQPSMP SIHNPMQLPR VPIVDQSVSV APTPNQPMMC QPQMFNPMNY  480
QNQMQNPALQ EQYARLMGFH HMQPTSQPIN VFRFCPSAVL QSQPAAAPGP ASGPTAGGSI  540
TNDIVNGNLG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359364ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818640.0LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653988.10.0PREDICTED: transcription factor PIF5-like
RefseqXP_011653989.10.0PREDICTED: transcription factor PIF5-like
TrEMBLA0A0A0KZR20.0A0A0A0KZR2_CUCSA; Uncharacterized protein
STRINGVIT_12s0028g01110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-46phytochrome interacting factor 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]